RxRx: Datasets released from Recursion’s automated cellular imaging and deep learning platform, to enable new machine learning tools and discover new biology.
NeurIPS 2019 competition
coming soon:
coming soon:
CellSignal: Disentangling biological signal from experimental noise in cellular images.
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To date, datasets have been released for cells treated with siRNA, a panel of immune perturbations, SARS-CoV-2 virus and a simulation of COVID-19 cytokine storm. Here is a summary of all of the RxRx datasets. Click the dataset title to learn more and download them.
Release Date
June 2019
August 2020
April 2020
August 2020
Cell Types
HUVEC
RPE
U2OS
HepG2
RPE
U2OS
HepG2
HUVEC
HRCE
Vero
Vero
HUVEC
Stains (Channels)
Hoechst
ConA
Phalloidin
Syto14
MitoTracker
WGA
ConA
Phalloidin
Syto14
MitoTracker
WGA
Hoechst
ConA
Phalloidin
Syto14
MitoTracker
WGA
ConA
Phalloidin
Syto14
MitoTracker
WGA
Hoechst
ConA
Phalloidin
Syto14
WGA
ConA
Phalloidin
Syto14
WGA
Hoechst
ConA
Phalloidin
Syto14
MitoTracker
WGA
ConA
Phalloidin
Syto14
MitoTracker
WGA
Plate Density
384-well
1536-well
1536-well
1536-well
Imaging Sites per Well
2
4
4
1
Perturbations Evaluated
1,138 siRNAs
434 soluble factors at 6 concentrations
1,672 small molecules at 6+ concentrations
Three viral conditions (active virus, irradiated, mock)
Three viral conditions (active virus, irradiated, mock)
1,856 small molecules at 4-6 concentrations in three COVID-19-associated cytokine storm conditions (severe storm, healthy, and no cytokines)
Total Number of Images
125,510
131,953
305,520
70,384
Image Dimension
512x512x6
1024x1024x6
1024x1024x5
2048x2048x6
Dataset Size
~46GB
~185GB
~450GB
~409GB
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